FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index6_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 24382081 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 50 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 5671785 | 2.8715012 | 5.004691 | 2 |
| CCAGG | 5362435 | 2.5890057 | 5.4532385 | 1 |
| CCTGG | 5376555 | 2.5830824 | 6.1823063 | 1 |
| CTTCT | 5309210 | 2.558045 | 5.421864 | 1 |
| CTGGA | 5075905 | 2.4814074 | 8.440964 | 1 |
| TCCAG | 4937940 | 2.3874753 | 5.49541 | 2 |
| CTCCT | 4899065 | 2.3311913 | 6.9071813 | 1 |
| CAGGA | 4597740 | 2.2587378 | 5.4211926 | 1 |
| CTGGG | 4647365 | 2.257525 | 7.955492 | 1 |
| CTTCA | 4549080 | 2.202615 | 5.3248544 | 1 |
| CTCCA | 4579865 | 2.1900508 | 7.2589755 | 1 |
| CCCAG | 4545550 | 2.1705306 | 6.958527 | 1 |
| CAGAA | 4269845 | 2.1110196 | 5.0420766 | 1 |
| CTCTG | 4274230 | 2.0564308 | 6.218378 | 1 |
| CTGAA | 3799100 | 1.8690636 | 5.4406443 | 1 |
| CTCAG | 3629530 | 1.754864 | 5.660611 | 1 |